Publications
2023
- Suhaimi, A. H., Kobayashi, M. J., Satake, A., Ng, C. C., Lee, S. L., Muhammad, N., ... & Yeoh, S. H. (2023)
An ecological transcriptome approach to capture the molecular and physiological mechanisms of mass flowering in Shorea curtisii. PeerJ, 11, e16368.
- Kudo, S. N., Bello, C. C., Artins, A., Caldana, C., & Satake, A. (2023)
Assessing the impacts of genetic defects on starch metabolism in Arabidopsis plants using the carbon homeostasis model. Journal of the Royal Society Interface, 20(208), 20230426.
- Satake, A., Ohta, K., Takeda-Kamiya, N., Toyooka, K., & Kusumi, J. (2023)
Seasonal gene expression signatures of delayed fertilization in Fagaceae. Molecular Ecology, 32(17), 4801-4813.
- Komoto H, Hata Y, Kyozuka J, Kajita Y, Toyama H, Nagahama A, & Satake A (2023).
The transcriptional changes underlying the flowering phenology shift in response to climate warming. Plant, Cell & Environment 47, 174-186.
- Satake A, Hagiwara T, Nagano AJ, Yamaguchi N, Sekimoto K, Shiojiri K, Sudo K (2024)
Plant molecular phenology and climate feedbacks mediated by BVOCs. Annual Review of Plant Science (in press).
- Satake A, Imai R, Fujino T, Tomimoto S, Ohta K, Naim M, ... & Kasahara M (2023).
The molecular clock in long-lived tropical trees is independent of growth rate. eLife, 202301.
- Han, Q., Kabeya, D., Inagaki, Y., Kawasaki, T., & Satake, A. (2023).
Carbon use strategies in shoot and acorn growth of two evergreen broadleaf trees unraveled by seasonal carbohydrate measurements and carbon isotope analysis. Tree Physiology, tpad072.
- Tomimoto, S., & Satake, A. (2023).
Modelling somatic mutation accumulation and expansion in a long-lived tree with hierarchical modular architecture. Journal of Theoretical Biology, 565, 111465.
- Pelayo, M. A., Morishita, F., Sawada, H., Matsushita, K., Iimura, H., He, Z., ... & Yamaguchi, N. (2023).
AGAMOUS regulates various target genes via cell cycle-coupled H3K27me3 dilution in floral meristems and stamens. The Plant Cell, koad123.
- Suhaimi, A. H., Kobayashi, M. J., Satake, A., Lee, S. L., Muhammad, N., Otani, T., ... & Yeoh, S. H. (2023).
Characterization of Leaf Transcriptome in a Tropical Tree Species, Shorea curtisii, over a Flowering Season. Japan Agricultural Research Quarterly: JARQ, 57(2), 139-144.
- Iwasa, Y., Tomimoto, S., & Satake, A. (2023).
The genetic structure within a single tree is determined by the behavior of the stem cells in the meristem. Genetics, 223(4), iyad020.
2022
- Araye, Q., Yahara, T., & Satake, A. (2022).
Latitudinal cline of flowering and fruiting phenology in Fagaceae in Asia. Biotropica, 55, 277-285.
- Komoto, H., Lin, C. H., Nozawa, Y., & Satake, A. (2022).
An External Coincidence Model for the Lunar Cycle Reveals Circadian Phase-Dependent Moonlight Effects on Coral Spawning. Journal of Biological Rhythms, 07487304221135916.
- Blue, Y. A., & Satake, A. (2022).
Analyses of gene copy number variation in diverse epigenetic regulatory gene families across plants: Increased copy numbers of BRUSHY1/TONSOKU/MGOUN3 (BRU1/TSK/MGO3) and SILENCING DEFECTIVE 3 (SDE3) in long-lived trees. Plant Gene, 32, 100384.
- Wang, Y., Han, Q., Kitajima, K., Kurokawa, H., Shimada, T., Yamaryo, T., ... & Satake, A. (2022).
Resource allocation strategies in the reproductive organs of Fagaceae species. Ecological Research.
- Numata, S., Yamaguchi, K., Shimizu, M., Sakurai, G., Morimoto, A., Alias, N., ... & Satake, A. (2022).
Impacts of climate change on reproductive phenology in tropical rainforests of Southeast Asia. Communications biology, 5(1), 1-10.
- Tomimoto, S., & Satake, A. (2022).
Modelling somatic mutation accumulation and expansion in a long-lived tree with hierarchical modular architecture. bioRxiv.
- Hacket Pain, A., Foest, J. J., Pearse, I. S., LaMontagne, J. M., Koenig, W. D., Vacchiano, G., ... & Ascoli, D. (2022).
MASTREE+: Time series of plant reproductive effort from six continents. Global change biology, 28(9), 3066-3082.
2021
- Satake, A., Nagahama, A., & Sasaki, E. (2021).
A cross-scale approach to unravel the molecular basis of plant phenology in temperate and tropical climates. New Phytologist (in press).
Satake, A., & Kelly, D. (2021).
Studying the genetic basis of masting. Philosophical Transactions of the Royal Society B, 376(1839), 20210116.
- Satake, A., & Kelly, D. (2021).
Delayed fertilization facilitates flowering time diversity in Fagaceae. Philosophical Transactions of the Royal Society B, 376(1839), 20210115.
- Ueno, H., Araya, K., Meleng, P., Kaliang, C. H., Sakai, S., Kishimoto-Yamada, K.,... & Satake, A. (2021).
Six-year population dynamics of seven passalid species in a humid tropical rainforest in Borneo. Entomological Science 24, 399-409.
- Hara, A., & Satake, A. (2021).
Why meals during resting time cause fat accumulation in mammals? Mathematical modeling of circadian regulation on glucose metabolism. Journal of Mathematical Biology, 83, 1-24.
- Aoyagi, Y.B., Kusumi, J., & Satake, A. (2021).
Copy number analyses of DNA repair genes reveal the role of poly (ADP-ribose) polymerase (PARP) in tree longevity. iScience, 24(7), 102779.
- Kuga, T, Seki, M, Kasuya, E, Satake, A (2021)
An evolutionary game model of sex-dependent antipredator signaling. American Naturalist, 198, 489-505.
- Yamaguchi N, Matsubara S, Yoshimizu K, Seki M, Hamada K, Kamitani M, Kurita Y, Inagaki S, Suzuki T, Gan ES, To T, Kakutani T, Nagano AJ, Satake A, Ito T (2021)
Removal of repressive histone marks creates epigenetic memory of recurring heat in Arabidopsis. Nature Communications 12, 1-16.
- Furuya T, Saito M, Uchimura H, Satake A, Nosaki S, Miyakawa T, Shimadzu S, Yamori W, Tanokura M, Fukuda H, Kondo Y (2021)
VISUAL network analysis reveals the role of BEH3 as a stabilizer in the secondary vascular development in Arabidopsis. The Plant Cell 33, 2618-2636
- Satake A, Leong Yao T, Kosugi Y, Chen YY (2021)
Testing the environmental prediction hypothesis for community-wide mass flowering in South-East Asia. Biotropica, 53, 608-618.
- Umeda M, Ikeuchi M, Ishikawa M, Ito T, Nishihama R, Kyozuka J, Torii KU, Sastake A, Goshima G, Sakakibara H (2021)
Plant stem cell research is uncovering the secrets of longevity and persistent growth. The Plant Journal 106, 326-335.
2020
- Tani N, Hamid ZAA, Joseph N, Sulaiman O, Hashim R, Arai T, Satake A, Kondo T, Kosugi A (2020)
Small temperature variations are a key regulator of reproductive growth and assimilate storage in oil palm (Elaeis guineensis). Scientific Reports 10, 1-11.
- Bogdziewicz M, Ascoli D, Hacket-Pain A, Koenig WD, Pearse I, Pesendorfer M, Satake A, Thomas P, Vacchiano G, Wohlgemuth T, Tanentzap A. (2020).
From theory to experiments for testing the proximate mechanisms of mast seeding: an agenda for an experimental ecology. Ecology Letters, 23, 210-220.
2019
- Satake A, Kawatsu K, Teshima K, Kabeya D, Han Q (2019)
Field transcriptome revealed a novel relationship between nitrate transport and flowering in Japanese beech. Scientific Reports 9, 4325.
- Webb AAR, Seki M, Satake A, Caldana C (2019)
Continuous dynamic adjustment of the plant circadian oscillator. Nature Communications 10, 550.
- Satake A, Kawatsu K, Chiba Y, Kitamura K, Han Q (2019)
Synchronized expression of FLOWERING LOCUS T between branches underlies mass flowering in Fagus crenata. Population Ecology 61, 5-13.
- Satake A, Chen Y-Y, Fletcher C, Kosugi Y (2019)
Drought and cool temperature cue general flowering synergistically in the aseasonal tropical forests of Southeast Asia. Ecological Research 34, 40-49.
2018
- Satake A (2018)
Flowering time as a model trait to bridge proximate and evolutionary questions. In 'Mathematical Modelling in Plant Biology', Morris RJ ed. Springer Nature Switzerland AG, Basel.
- Ohara T, Hearn T, Webb, A, Satake A (2018)
Gene regulatory network models in response to sugars in the plant circadian system. Journal of Theoretical Biology 457, 137-151.
- Satake A, Kawatsu K, Chiba Y, Kitamura K, Han Q (2018)
Synchronized expression of FLOWERING LOCUS T between branches underlies mass flowering in Fagus crenata. Population Ecology 61, 5-13.
- Satake A, Chen Y-Y, Fletcher C, Kosugi Y (2018)
Drought and cool temperature cue general flowering synergistically in the aseasonal tropical forests of Southeast Asia. Ecological Research 34, 40-49.
- Nagahama, A, Kubota, Y, Satake A (2018)
Climate warming shortens flowering duration: a comprehensive assessment of plant phenological responses based on gene expression analyses and mathematical modeling. Ecological Research 34, 40-49.
- Chen Y-Y, Satake A, Sun I-F, Kosugi Y, Tani M, Numata S, Hubbell SP, Fletcher C, Noor NSM, Wright SJ. (2018)
Species-specific flowering cues among general flowering Shorea species at the Pasoh Research Forest, Malaysia. Journal of Ecology 106, 586-598.
2017
- Ohara T, Satake A (2017)
Photosynthetic Entrainment of the circadian clock facilitates plant growth under environmental fluctuations: Perspectives from an integrated model of phase oscillator and phloem transportation. Frontiers in Plant Science. 8, 1859.
- Seki M, Ohara T, Hearn TJ, Frank, A, da Silva, VCH, Caldana C, Webb AAR, Satake A. (2017)
Adjustment of the Arabidopsis circadian oscillator by sugar signalling dictates the regulation of starch metabolism. Scientific Reports 7, 8305.
- Yeoh SH., Satake A, Numata S, Ichie T, Lee SL, Basherudin N, Muhammad N, Kondo T, Otani T, Hashim M, Tani N (2017).
Unraveling proximate cues of mass flowering in the tropical forests of Southeast Asia from gene expression analyses. Molecular Ecology (DOI: 10.1111/mec.14257).
- Miyazaki Y, Satake A. (2017)
Relationship between seasonal progression of floral meristem development and FLOWERING LOCUS T expression in the deciduous tree Fagus crenata.Ecological Research 32, 627-631.
2016
- Abe, T, Tachiki Y, Kon H, Nagasaka A, Onodera K, Minamino K, Han Q, Satake A.
Parameterization and validation of a resource budget model for masting using spatiotemporal flowering data of individual trees. Ecology Letters.
- Satake, A, Seki M, Iima M, Teramoto T, Nishiura Y (2016)
Florigen distribution determined by a source-sink balance explains the diversity of inflorescence structures in Arabidopsis. Journal of Theoretical Biology 395, 227-237.
2015
- Tachiki, Y, Satake A (2015)
Pair-approximation analyses of evolutionarily stable strategies for flowering time in clonal monocarpic plants. Japan Journal of Industrial and Applied Mathematics 32, 615-639.
- Webb, A.A.R., Satake A (2015).
Understanding circadian regulation of carbohydrate metabolism in Arabidopsis using mathematical models. Plant & Cell Physiology 56, 586-593.
- Tachiki, Y, Makita, Suyama Y, Satake A (2015).
Spatially explicit model for flowering time in bamboos: long rhizomes drive the evolution of delayed flowering. Journal of Ecology 104, 585-593.
- Sakurai, G, Satake A, Yamaji N, Mitani-Ueno N, Yokozawa M, Feugier FG, Ma JF (2015).
In silico simulation modeling reveals the importance of the Caspian strip for efficient silicon uptake in rice roots. Plant & Cell Physiology 56, 631-639.
- Seki M, Feugier FG, Song X, Ashikari M, Nakamura H, Ishiyama K, Yamaya T, Ikeda M, Kitano H, Satake A (2015) A mathematical model of phloem sucrose transport as a new tool for designing rice panicle structure for high grain yield. Plant & Cell Physiology 56, 605-619.
2014
- Miyazaki Y, Maruyama Y, Chiba Y, Kobayashi MJ, Joseph B, Shimizu KK, Mochida K, Hiura T, Kon H, Satake A (2014)
Nitrogen as a key regulator of flowering in Fagus crenata: understanding the physiological mechanism of masting by gene expression analysis. Ecology Letters 17, 1299-1309.
- Yamashita Y, Kadokura Y, Sotta N, Fujiwara T, Takigawa I, Satake A, Onouchi H, Naito S (2014)
Ribosomes in a stacked array. Elucidation of the step in translation elongation at which they are stalled during S-adenosyl-L-methionine-induced translation arrest of CGS1 mRNA. The Journal of Biological Chemistry 289, 12693-12704.
- Diwan D, Komazaki S, Suzuki M, Nemoto N, Aita T, Satake A, Nishigaki K (2014)
Systematic genome sequence differences among leaf cells within individual trees. BMC Genomics 15,142-153.
- Honjo K, Satake A (2014) N-player mosquito net game: Individual and social rationality in the misuse of insecticide-treated nets. Journal of Theoretical Biology 342, 39-46.
2013
- Feugier FG, Satake A (2013)
Hyperbolic features of the circadian clock oscillations can explain linearity in leaf starch dynamics and adaptation of plants to diverse light and dark cycles. Ecological Modelling 290, 110-120.
- Satake A, Kawagoe T, Saburi Y, Chiba Y, Sakurai G, Kudoh H (2013)
Forecasting flowering phenology under climate warming by modelling regulatory dynamics of flowering-time genes. Nature Communications 4, 2303.
- Satake A. (2013)
New insights into mechanism and evolution of mast flowering: feedback between theory and experiment. Ecological Research 28, 131-132.
- Ishikawa K, Hachiya N, Aikoh T, Shoji Y, NIshinari K, Satake A. (2013)
A decision support model for traffic congestion in protected areas: A case study of Shiretoko National Park. Tourism Management Perspectives 8, 18-27.
- Kashima K, Ohtsuki H, Satake A. (2013)
Fission-fusion bat behavior as a strategy for balancing the conflicting needs of maximizing information accuracy and minimizing infection risk. Journal of Theoretical Biology 318, 101-109.
- Honjo K, Chaves LF, Satake, A, Kaneko A, Minakawa N. (2013)
When they don't bite, we smell money: understanding malaria bednet misuse. Parasitology 140, 580-586.
2012
- Feugier GF, Satake A (2012)
Dynamical feedback between circadian clock and sucrose availability explains adaptive response of starch metabolism to various photoperiods. Frontiers in Plant Science 3, 1-11.
- Satake A, Iwasa Y (2012)
A stochastic model of chromatin modification: cell population coding of winter memory in plants. Journal of Theoretical Biology 302, 6-17.
- Chaves LF, Satake A, Hashizume M, Minakawa N. (2012)
Indian Ocean Dipole and Rainfall drive a Moran Effect in East Africa Malaria transmission. Journal of Infectious Diseases 205, 1885-1891.
2011
- Chaves LF, Satake A, Hashizume M, Minakawa N. (2011)
Regime shifts and heterogeneous trends in malaria time series from Western Kenya Highlands. Parasitology 14, 1-12.
- Satake A , Araki H (2011)
Stocking of captive-bred fish can cause long-term population decline and gene pool replacement: Predictions from a population dynamics model incorporating density-dependent mortality. Theoretical Ecology 5, 283-296.
2010
- Tachiki, Y, Iwasa Y, Satake A (2010)
Pollinator coupling can induce synchronized flowering in different plant species. Journal of Theoretical Biology 267, 153-163.
- Satake, A (2010)
Diversity of plant life cycles is generated by dynamic epigenetic regulation in response to vernalization. Journal of Theoretical Biology 266, 595-605.
- Aikawa, S, Kobayashi MJ, Satake A, Shimizu KK, Kudoh H (2010)
Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment. Proceedings of the National Academy of Sciences of the United States of America 107, 11632-11637.
- Satake A, Tachiki Y, Iwasa Y (2010)
Roles of pollinator attraction and environmental fluctuation in inducing flowering synchrony. in "Temporal Niche Dynamics," Kelly C ed. Cambridge University Press. Cambridge .
- Iwasa, Y, Satake A, Tachiki Y. (2010)
Evolution of synchronized and intermittent reproduction (masting) of trees: key role of regeneration dynamics. in "Temporal Niche Dynamics," Kelly C ed. Cambridge University Press. Cambridge.
2009
- Satake A, Iwasa Y (2009)
Preface in Special Feature; Interface between ecology and social sciences in global environmental change. Ecological Research 24, 477-478
- Rodrigues A, Koeppl H, Ohtsuki H, Satake A (2009)
A game theoretical model of deforestation in human-environment relationships. Journal of Theoretical Biology 258, 127-134
- Ghazoul J, Satake A (2009)
Non-viable seed set enhances plant fitness: the sacrificial sibling hypothesis. Ecology 90, 369-377
2008
- Satake A, Koizumi I (2008)
Preface in Special Feature; Population synchrony in ecological systems. Population Ecology 50, 325-327
- Satake A, Rudel TM, Onuma, A (2008)
Scale mismatches and their ecological and economic effects on landscapes: A spatially explicit model. Global Environmental Change 18, 768-775
- Satake A, Levin SA, Iwasa Y (2008)
Comparison between perfect information and passive-adaptive social learning models of forest harvesting. Theoretical Ecology 1, 189-197
- Satake A, Bjørnstad ON (2008)
A resource budget model to explain intraspecific variation in mast reproductive dynamics. Ecological Research 23, 3-10
2007
- Satake A, Rudel TM (2007)
Modelling the forest transition: forest scarcity and ecosystem service hypotheses. Ecological Applications 17, 2024-2036
- Satake A, Leslie HM, Levin SA, Iwasa Y (2007)
Coupled ecological-social dynamics in a forested landscape: spatial interactions and information flow. Journal of Theoretical Biology 246, 695-707
- Satake A, Janssen MA, Levin SA, Iwasa Y (2007)
Collective deforestation induced by social learning under uncertainty of forest-use value. Ecological Economics 63, 452-462
- Satake A (2007)
The role of economic incentives and social norms in forest resource management. Ecological Research 22, 21-22
- Satake A (2007) (in Japanese)
Next Generation Theoretical Ecology: Coupling Social and Ecological Dynamics. Japanese Journal of Ecology 57, 289-298
- Satake A (2007) (in Japanese)
Feedback between models and data: a pollen coupling model about mast seeding. Japanese Journal of Ecology 57, 200-207
2006
- Satake A, Iwasa Y (2006)
Coupled ecological and social dynamics in a forested landscape: the deviation of the individual decisions from the social optimum. Ecological Research 21, 370-379
- Satake A, Ohgushi T, Urano S, Uchimura K (2006)
Modeling population dynamics of a tea pest with temperature dependent development: predicting emergence timing and potential damage. Ecological Research 21, 370-379
- Satake A, Bjørnstad ON, Iwasa Y (2006)
Invasibility of seed predators on synchronized and intermittent seed production of host plants. in "Conceptual Ecology and Invasion Biology: Reciprocal Approaches to Nature," Cadotte M. W., S. M. McMahon, and T. Fukami eds. Springer, Dordrecht
2004
- Satake A (2004)
Modeling spatial dynamics of episodic and synchronous reproduction by plant populations: the effect of small-scale pollen coupling and large-scale climate. Population Ecology 26, 119-128
- Satake A, Bjørnstad ON (2004)
Spatial dynamics of specialist seed predators on synchronized and intermittent seed production of host plants. American Naturalist 16, 591-605
- Satake A, Bjørnstad ON, Kobro S (2004)
Masting and trophic cascades: interplay between rowan trees, apple fruit moth, and their parasitoid in southern Norway. Oikos 104, 540-550
- Satake A, Iwasa Y, Hakoyama H, Hubbell SP (2004)
Estimating local interaction from spatiotemporal forest data, and monte carlo bias correction. Journal of Theoretical Biology 226, 225-235
- Iwasa Y, Satake A (2004)
The mechanism inducing spatially extended synchrony in mast seeding: the role of pollen coupling and environmental fluctuation. Ecological Research 19, 13-20
2003
- Satake A (2003)
(in Japanese) Pattern formation in forest ecosystems: why, how, where? Parity 18, 49-53
2002
- Iwasa Y, Satake A (2002)
Synchronized reproduction of trees caused by pollen exchange: modeled as coupled chaos systems. Acta Biologica Venezuelica 22, 45-57
- Satake A, Iwasa Y (2002)
The synchronized and intermittent reproduction of forest trees is mediated by the Moran effect, only in association with pollen coupling. Journal of Ecology 90, 830-838
- Satake A, Iwasa Y (2002)
Spatially limited pollen exchange and a long-range synchronization of trees. Ecology 83, 993-1005
2001
- Satake A, Sasaki A, Iwasa Y (2001) Variable timing of reproduction in unpredictable environment. Theoretical Population Biology 60, 1-15
2000
- Satake A, Iwasa Y (2000)
Pollen-coupling of forest trees: forming synchronized and periodic reproduction out of chaos. Journal of Theoretical Biology 203, 63-84
- Satake A (2000)
(in Japanese) What can we know from long-term spatial data?: a case study at a neotropical forest 50 hectare plot, Barro Colorado Island. Japanese Journal of Ecology 50, 255-260
- Satake A, Hara T, Nehira K (2000)
(in Japanese) Spatial ecology: the dynamics of spatial patterns. Japanese Journal of Ecology 50, 253-254
- Satake A (2000)
(in Japanese) Spatial ecology: physical approach to biological pattern formation. Biological physics 40, 341-345
1998
- Satake A, Kubo T, Iwasa Y (1998)
Noise-induced regularity of spatial wave patterns in subalpine Abies forests. Journal of Theoretical Biology 195, 465-479