{"id":38,"date":"2019-02-05T12:03:20","date_gmt":"2019-02-05T03:03:20","guid":{"rendered":"http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/?page_id=38"},"modified":"2025-07-07T17:47:03","modified_gmt":"2025-07-07T08:47:03","slug":"publications","status":"publish","type":"page","link":"http:\/\/www.biology.kyushu-u.ac.jp\/~kteshima\/publications","title":{"rendered":"Publications"},"content":{"rendered":"\n<ul class=\"wp-block-list\">\n<li>Tanaka, Hayakawa and Teshima. 2023. <em>Power of neutrality tests for detecting natural selection<\/em>.&nbsp;&nbsp;<a href=\"https:\/\/academic.oup.com\/g3journal\/advance-article\/doi\/10.1093\/g3journal\/jkad161\/7229490?searchresult=1\"><em>G3: Genes|Genomes|Genetics<\/em>, jkad161<\/a>\n<ul class=\"wp-block-list\">\n<li><img loading=\"lazy\" decoding=\"async\" width=\"150\" height=\"117\" class=\"wp-image-665\" style=\"width: 150px;\" src=\"http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/02\/tanaka_etal.png\" alt=\"\" srcset=\"http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/02\/tanaka_etal.png 1322w, http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/02\/tanaka_etal-300x234.png 300w, http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/02\/tanaka_etal-1024x798.png 1024w, http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/02\/tanaka_etal-768x598.png 768w\" sizes=\"auto, (max-width: 150px) 100vw, 150px\" \/>\u30b2\u30ce\u30e0\u591a\u69d8\u6027\u60c5\u5831\u3092\u89e3\u6790\u3057\u3066\u3001\u9069\u5fdc\u9032\u5316\u3092\u53d7\u3051\u305f\u304b\u3069\u3046\u304b\u3092\u8abf\u3079\u308b\u3053\u3068\u304c\u3067\u304d\u307e\u3059\u3002\u305d\u308c\u3089\u306e\u65b9\u6cd5\u306f\u6ce8\u76ee\u3059\u308b\u591a\u69d8\u6027\u3084\u8a08\u7b97\u65b9\u6cd5\u306b\u9055\u3044\u304c\u3042\u308b\u3053\u3068\u304b\u3089\u3001\u305d\u308c\u305e\u308c\u306e\u65b9\u6cd5\u3067\u691c\u51fa\u3067\u304d\u308b\u9069\u5fdc\u9032\u5316\u306f\u7570\u306a\u308a\u307e\u3059\u3002\u3053\u306e\u7814\u7a76\u3067\u306f\u30b7\u30df\u30e5\u30ec\u30fc\u30b7\u30e7\u30f3\u3092\u884c\u306a\u3063\u3066\u4eee\u60f3\u7684\u306b\u9069\u5fdc\u9032\u5316\u3092\u767a\u751f\u3055\u305b\u3001\u3055\u307e\u3056\u307e\u306a\u691c\u51fa\u65b9\u6cd5\u306e\u691c\u51fa\u52b9\u7387\u3092\u6e2c\u5b9a\u3057\u3066\u691c\u51fa\u3067\u304d\u308b\u9069\u5fdc\u306e\u9055\u3044\u3092\u8abf\u3079\u307e\u3057\u305f\u3002\u6bd4\u8f03\u7684\u6700\u8fd1\u306b\u751f\u3058\u305f\u9069\u5fdc\u3092\u691c\u51fa\u3057\u3084\u3059\u3044\u65b9\u6cd5\u3084\u3001\u53e4\u3044\u6642\u4ee3\u306b\u751f\u3058\u305f\u9069\u5fdc\u307e\u3067\u691c\u51fa\u3067\u304d\u308b\u65b9\u6cd5\u306a\u3069\u3001\u65b9\u6cd5\u3054\u3068\u306e\u691c\u51fa\u7279\u6027\u306e\u9055\u3044\u3092\u8b70\u8ad6\u3057\u307e\u3057\u305f\u3002<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Hayakawa <em>et al<\/em>. 2021. Lower promoter activity of the&nbsp;<em>ST8SIA2<\/em>&nbsp;gene has been favored in evolving human collective brains. <a href=\"https:\/\/doi.org\/10.1371\/journal.pone.0259897\">PLoS ONE 16(12): e0259897<\/a><\/li>\n\n\n\n<li>Mukasyaf <em>et al.<\/em> 2021. Development and Characterization of EST-SSR Markers for <em>Pinus Thunbergii<\/em>.&nbsp;<a href=\"https:\/\/doi.org\/10.1080\/13416979.2021.1964152\"><em>Journal of Forest Research<\/em>, August, 1\u20134<\/a>.<\/li>\n\n\n\n<li>Dokan <em>et al.<\/em> 2021, Effects of single nucleotide polymorphism ascertainment on population structure inferences. <a href=\"https:\/\/doi.org\/10.1093\/g3journal\/jkab128\">G3: Genes|Genomes|Genetics<\/a>\n<ul class=\"wp-block-list\">\n<li><img loading=\"lazy\" decoding=\"async\" width=\"150\" height=\"96\" class=\"wp-image-729\" style=\"width: 150px;\" src=\"http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/07\/dokan.jpg\" alt=\"\" srcset=\"http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/07\/dokan.jpg 1586w, http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/07\/dokan-300x193.jpg 300w, http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/07\/dokan-1024x657.jpg 1024w, http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/07\/dokan-768x493.jpg 768w, http:\/\/www.biology.kyushu-u.ac.jp\/biology.kyushu-u.ac.jp\/kteshima\/blog\/wp-content\/uploads\/2025\/07\/dokan-1536x986.jpg 1536w\" sizes=\"auto, (max-width: 150px) 100vw, 150px\" \/>\u30b2\u30ce\u30e0\u591a\u69d8\u6027\u30c7\u30fc\u30bf\u304c\u4e00\u822c\u7684\u306b\u306a\u308a\u307e\u3057\u305f\u304c\u3001\u30c7\u30fc\u30bf\u306e\u751f\u6210\u65b9\u6cd5\u306b\u3088\u3063\u3066\u306f\u30d0\u30a4\u30a2\u30b9\u304c\u5165\u308a\u307e\u3059\u3002\u3053\u306e\u7814\u7a76\u3067\u306f\u30bf\u30a4\u30d4\u30f3\u30b0\u30c7\u30fc\u30bf\u3092\u5ff5\u982d\u306b\u7f6e\u3044\u3066\u3001\u305d\u306e\u53d6\u5f97\u30c7\u30b6\u30a4\u30f3\u3068\u30d0\u30a4\u30a2\u30b9\u306e\u5f71\u97ff\u306b\u3064\u3044\u3066\u8003\u5bdf\u3057\u307e\u3057\u305f\u3002\u305d\u306e\u7d50\u679c\u3001\u30bf\u30a4\u30d4\u30f3\u30b0\u30c7\u30fc\u30bf\u306f\u4e88\u5099\u8abf\u67fb\u3067\u7528\u3044\u308b\u30b5\u30f3\u30d7\u30eb\uff08\u30d1\u30cd\u30eb\u30b5\u30f3\u30d7\u30eb\uff09\u306e\u5f71\u97ff\u3092\u5f37\u304f\u53d7\u3051\u308b\u3053\u3068\u304c\u308f\u304b\u308a\u307e\u3057\u305f\u3002\u7279\u306b\u96c6\u56e3\u69cb\u9020\u306e\u89e3\u6790\u3067\u306f\u89e3\u6790\u7d50\u679c\u304c\u5927\u304d\u304f\u6b6a\u307f\u3046\u308b\u3053\u3068\u3092\u793a\u3057\u3001\u3053\u306e\u6b6a\u307f\u3092\u9632\u3050\u305f\u3081\u306e\u30c7\u30fc\u30bf\u53d6\u5f97\u6cd5\u3092\u63d0\u6848\u3057\u307e\u3057\u305f\u3002<\/li>\n<\/ul>\n<\/li>\n\n\n\n<li>Hirata <em>et al<\/em>. 2021, Evaluating the genetic diversity in two tropical leguminous trees,<em>&nbsp;Dalbergia cochinchinensis<\/em>&nbsp;and<em>&nbsp;D. nigrescens<\/em>, in lowland forests in Cambodia and Thailand using MIG-seq. <a href=\"https:\/\/doi.org\/10.1266\/ggs.20-00026\">Genes Genet. Syst. 96: 41-53<\/a><\/li>\n<\/ul>\n\n\n\n<ul id=\"block-2b8c9cdf-12f7-4ee6-a5c9-9a5994ac72ee\" class=\"wp-block-list\">\n<li>Satta <em>et al<\/em>. Two-dimensional site frequency spectrum for detecting, classifying and dating incomplete selective sweeps. <a href=\"https:\/\/doi.org\/10.1266\/ggs.19-00012\">Genes Genet. Syst., 2019, 94, 283-300<\/a>.<\/li>\n\n\n\n<li>Yamauchi <em>et al<\/em>., Autophagy controls reactive oxygen species homeostasis in guard cells that is essential for stomatal opening. PNAS, 2019, 116, 19187-19192<\/li>\n\n\n\n<li>Moriguchi <em>et al.<\/em>, 2019, Inferring the demographic history of Japanese cedar,&nbsp;<em>Cryptomeria japonica<\/em>, using amplicon sequencing. Heredity, 123: 371-383<\/li>\n\n\n\n<li>Satake <em>et al.<\/em>, Field transcriptome revealed a novel relationship between nitrate transport and flowering in Japanese beech. Scientific reports, 2019, 9: 4325<\/li>\n\n\n\n<li>Nakabayashi <em>et al.<\/em>, The potential role of temperate Japanese regions as refugia for the coral&nbsp;<em>Acropora hyacinthus<\/em>&nbsp;in the face of climate change.&nbsp;Scientific Reports, 2019, 9: 1892<\/li>\n<\/ul>\n\n\n\n<ul id=\"block-2b8c9cdf-12f7-4ee6-a5c9-9a5994ac72ee\" class=\"wp-block-list\">\n<li>Nakamura <em>et al<\/em>. Effects of cyclic changes in population size on neutral genetic diversity. Ecology and Evolution, 2018, 8:9362-9371<\/li>\n\n\n\n<li>Hiraoka <em>et al.<\/em> Potential of genome-wide studies in unrelated plus trees of a coniferous species,&nbsp;<em>Cryptomeria japonica<\/em>&nbsp;(japanese cedar).&nbsp; Frontiers in Plant Science, 2018, 9<\/li>\n\n\n\n<li>Fujito <em>et al<\/em>. A new inference method for detecting an ongoing selective sweep. Genes Genet. Syst., 2018, 93, 149-161.<\/li>\n\n\n\n<li>Fujito <em>et al.<\/em> Positive selection on schizophrenia-associated <em>ST8SIA2<\/em> gene in post-glacial Asia. PLoS ONE, 2018, 13, e0200278.<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Hayakawa <em>et al<\/em>. Coevolution of Siglec-11 and Siglec-16 via gene conversion in primates. BMC Evol. Biol., 2017, 17, 228.<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Ikezaki <em>et al.<\/em> Inferences of population structure and demographic history for&nbsp;<em>Taxodium distichum<\/em>, a coniferous tree in North America, based on Amplicon sequencing analysis. American Journal of Botany, 2016, 103: 1937-1949<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Ng <em>et al<\/em>. Closely related and sympatric but not all the same: genetic variation of Indo-West Pacific&nbsp;<em>Rhizophora<\/em>&nbsp;mangroves across the Malay Peninsula. Conservation genetics, 2015, 16: 137\u2014150<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Urashi <em>et al<\/em>. Inferences of evolutionary history of a widely distributed mangrove species,&nbsp;<em>Bruguiera gymnorrhiza<\/em>, in the Indo-West Pacific region. Ecology and evolution, 2013, 7: 2251\u20142261<\/li>\n<\/ul>\n\n\n\n<ul id=\"block-2b8c9cdf-12f7-4ee6-a5c9-9a5994ac72ee\" class=\"wp-block-list\">\n<li>Iwanaga et al. Population structure and demographic history of a tropical lowland rainforest tree species&nbsp;<em>Shorea parvifolia<\/em>&nbsp;(Dipterocarpaceae) from Southeastern Asia. Ecology and evolution, 2012, 7: 1663\u20141675<\/li>\n\n\n\n<li>Teshima, KM&nbsp;and Innan, H., The coalescent with selection on copy number variants. Genetics, 2012, 190: 1077\u20141086<\/li>\n\n\n\n<li>Wang et al. Specific inactivation of two immunomodulatory <em>SIGLEC<\/em> genes during human evolution. Proc. Natl. Acad. Sci. USA, 2012, 109, 9935-9940.<\/li>\n\n\n\n<li>Wang et al. Evolution of Siglec-11 and Siglec-16 genes in Hominins. Mol. Biol. Evol., 2012, 29, 2073-2086.<\/li>\n<\/ul>\n\n\n\n<ul id=\"block-2b8c9cdf-12f7-4ee6-a5c9-9a5994ac72ee\" class=\"wp-block-list\">\n<li>Takahashi <em>et al.<\/em> Variations in Hd1 proteins,&nbsp;<em>Hd3a<\/em>&nbsp;promoters, and&nbsp;<em>Ehd1<\/em>&nbsp;expression levels contribute to diversity of flowering time in cultivated rice. Proceedings of the National Academy of Sciences USA, 2009, 106: 4555\u20144560, 2009<\/li>\n\n\n\n<li>Teshima, KM&nbsp;and Innan, H., mbs: modifying Hudson&#8217;s ms software to generate samples of DNA sequences with a biallelic site under selection. BMC bioinformatics, 2009, 10: 166<\/li>\n<\/ul>\n\n\n\n<ul id=\"block-2b8c9cdf-12f7-4ee6-a5c9-9a5994ac72ee\" class=\"wp-block-list\">\n<li>Blekhman <em>et al<\/em>. Natural selection on genes that underlie human disease susceptibility. Current biology, 2008, 18: 883\u2014889<\/li>\n\n\n\n<li>Teshima, KM&nbsp;and Innan, H., Neofunctionalization of duplicated genes under the pressure of gene conversion. Genetics, 2008, 178: 1385\u20141398<\/li>\n<\/ul>\n\n\n\n<ul id=\"block-2b8c9cdf-12f7-4ee6-a5c9-9a5994ac72ee\" class=\"wp-block-list\">\n<li>Teshima, KM&nbsp;and Przeworski, M.,Directional positive selection on an allele of arbitrary dominance. Genetics, 2006, 172: 713\u2014718<\/li>\n\n\n\n<li>Teshima <em>et al.<\/em>, How reliable are empirical genomic scans for selective sweeps? Genome Research, 2006, 16: 702\u2014712<\/li>\n\n\n\n<li>Hayakawa et al. Fixation of the human-specific CMP-N-acetylneuraminic acid hydroxylase pseudogene and implications of haplotype diversity for human evolution. Genetics, 2006, 172, 1139-1146.<\/li>\n\n\n\n<li>Angata et al. Discovery of Siglec-14, a novel sialic acid receptor undergoing concerted evolution with Siglec-5 in primates. FASEB J., 2006, 20, 1964-1973.<\/li>\n\n\n\n<li>Altheide et al. System-wide genomic and biochemical comparisons of sialic acid biology among primates and rodents: Evidence for two modes of rapid evolution. J. Biol. Chem., 2006, 281, 25689-25702.<\/li>\n<\/ul>\n\n\n\n<ul id=\"block-2b8c9cdf-12f7-4ee6-a5c9-9a5994ac72ee\" class=\"wp-block-list\">\n<li>Hayakawa et al. A human-specific gene in microglia. Science, 2005, 309, 1693.<\/li>\n\n\n\n<li>The Chimpanzee Sequencing and Analysis Consortium. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature, 2005, 437, 69-87.<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Teshima, KM&nbsp;and Innan, H., The effect of gene conversion on the divergence between duplicated genes. Genetics, 2004, 166: 1553-1560<\/li>\n<\/ul>\n\n\n\n<ul id=\"block-2b8c9cdf-12f7-4ee6-a5c9-9a5994ac72ee\" class=\"wp-block-list\">\n<li>Teshima, KM&nbsp;and Tajima, F, The effect of migration during the divergence.&nbsp; Theoretical population biology, 2002, 62: 81\u201495<\/li>\n\n\n\n<li>Chou et al. Inactivation of CMP-N-acetylneuraminic acid hydroxylase occurred prior to brain expansion during human evolution. Proc. Natl. Acad. Sci. USA, 2002, 99, 11736-11741.<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Hayakawa et al. Alu-mediated inactivation of the human CMP-N-acetylneuraminic acid hydroxylase gene. Proc. Natl. Acad. Sci. USA, 2001, 98, 11399-11404.<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-38","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/www.biology.kyushu-u.ac.jp\/~kteshima\/wp-json\/wp\/v2\/pages\/38","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www.biology.kyushu-u.ac.jp\/~kteshima\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www.biology.kyushu-u.ac.jp\/~kteshima\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www.biology.kyushu-u.ac.jp\/~kteshima\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biology.kyushu-u.ac.jp\/~kteshima\/wp-json\/wp\/v2\/comments?post=38"}],"version-history":[{"count":26,"href":"http:\/\/www.biology.kyushu-u.ac.jp\/~kteshima\/wp-json\/wp\/v2\/pages\/38\/revisions"}],"predecessor-version":[{"id":731,"href":"http:\/\/www.biology.kyushu-u.ac.jp\/~kteshima\/wp-json\/wp\/v2\/pages\/38\/revisions\/731"}],"wp:attachment":[{"href":"http:\/\/www.biology.kyushu-u.ac.jp\/~kteshima\/wp-json\/wp\/v2\/media?parent=38"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}